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dpni  (New England Biolabs)


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  • 99

    Structured Review

    New England Biolabs dpni
    Dpni, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 6042 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dpni/DpnI/pm42140896-420-7-8
    Average 99 stars, based on 6042 article reviews
    dpni - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: A cryptic-site ligand stabilizes a non-canonical interface and blocks membrane insertion of the chloride intracellular channel CLIC1.
    Article Snippet: .. The PCR product was treated with DpnI (New England Biolabs, Cat. # R0176S) at 37 °C for 1 h to remove methylated parental DNA. ..

    Article Title: Systematic mapping of chimera-permissive sites by CRISPR-guided PAM scanning
    Article Snippet: Each reaction contained 1.25 μL of guide (gF) primer (5 μM), 1.25 μL of pML guide UR (5PHOS) primer (5 μM), 9.0 μL of nuclease-free water, 12.5 μL of Q5 2× Master Mix (New England Biolabs, M0492L), and 1.0 μL of template plasmid DNA (10 ng/μL). .. The presence of the PCR product was confirmed by agarose gel electrophoresis before adding 1.0 μL of DpnI (NEB, R0176S) to digest methylated template DNA. ..

    Article Title: Towards autonomous biology: Compiler-Verified Protocols as a Foundation for Real-World AI Execution
    Article Snippet: PCR was performed using 2× Phanta Max Master Mix (Vazyme Biotech Co., Ltd) (98 °C 30 s; 30 cycles of 98 °C 10 s, 65 °C 20 s, 72 °C 2.5 min; 72 °C 5 min). .. Residual template was removed by DpnI (New England Biolabs) digestion (37 °C, 1 h), and PCR products were purified by magnetic beads (Vazyme Biotech Co., Ltd) and eluted in nuclease-free water. .. Gibson Assembly reactions (50 °C, 15 min) used ClonExpress Ultra One Step Cloning Kit (Vazyme Biotech Co., Ltd).

    Methylation:

    Article Title: A cryptic-site ligand stabilizes a non-canonical interface and blocks membrane insertion of the chloride intracellular channel CLIC1.
    Article Snippet: .. The PCR product was treated with DpnI (New England Biolabs, Cat. # R0176S) at 37 °C for 1 h to remove methylated parental DNA. ..

    Article Title: Systematic mapping of chimera-permissive sites by CRISPR-guided PAM scanning
    Article Snippet: Each reaction contained 1.25 μL of guide (gF) primer (5 μM), 1.25 μL of pML guide UR (5PHOS) primer (5 μM), 9.0 μL of nuclease-free water, 12.5 μL of Q5 2× Master Mix (New England Biolabs, M0492L), and 1.0 μL of template plasmid DNA (10 ng/μL). .. The presence of the PCR product was confirmed by agarose gel electrophoresis before adding 1.0 μL of DpnI (NEB, R0176S) to digest methylated template DNA. ..

    Article Title: Targeting Nipah virus replication: A fluorescence polarization assay for high-throughput modulators screening against the N TAIL –XD interaction
    Article Snippet: .. The amplification product was digested with DpnI (New England Biolabs) to remove the methylated DNA template and then transferred into the pDONR vector (Invitrogen) through a Gateway BP clonase–mediated recombination reaction (Invitrogen). .. From the resulting entry vector, the sequence of interest was then transferred into the pETG20A vector ( ) using Gateway LR clonase (Invitrogen).

    Agarose Gel Electrophoresis:

    Article Title: Systematic mapping of chimera-permissive sites by CRISPR-guided PAM scanning
    Article Snippet: Each reaction contained 1.25 μL of guide (gF) primer (5 μM), 1.25 μL of pML guide UR (5PHOS) primer (5 μM), 9.0 μL of nuclease-free water, 12.5 μL of Q5 2× Master Mix (New England Biolabs, M0492L), and 1.0 μL of template plasmid DNA (10 ng/μL). .. The presence of the PCR product was confirmed by agarose gel electrophoresis before adding 1.0 μL of DpnI (NEB, R0176S) to digest methylated template DNA. ..

    other:

    Article Title: Allosteric Biosensors Unravel GTPase-Effector Feedback
    Article Snippet: For linker optimization, mutants were made using Q5 Hot Start High-Fidelity Master Mix (NEB), DpnI (NEB), T4 PNK (NEB), and T4 DNA Ligase (NEB).

    Purification:

    Article Title: Towards autonomous biology: Compiler-Verified Protocols as a Foundation for Real-World AI Execution
    Article Snippet: PCR was performed using 2× Phanta Max Master Mix (Vazyme Biotech Co., Ltd) (98 °C 30 s; 30 cycles of 98 °C 10 s, 65 °C 20 s, 72 °C 2.5 min; 72 °C 5 min). .. Residual template was removed by DpnI (New England Biolabs) digestion (37 °C, 1 h), and PCR products were purified by magnetic beads (Vazyme Biotech Co., Ltd) and eluted in nuclease-free water. .. Gibson Assembly reactions (50 °C, 15 min) used ClonExpress Ultra One Step Cloning Kit (Vazyme Biotech Co., Ltd).

    Magnetic Beads:

    Article Title: Towards autonomous biology: Compiler-Verified Protocols as a Foundation for Real-World AI Execution
    Article Snippet: PCR was performed using 2× Phanta Max Master Mix (Vazyme Biotech Co., Ltd) (98 °C 30 s; 30 cycles of 98 °C 10 s, 65 °C 20 s, 72 °C 2.5 min; 72 °C 5 min). .. Residual template was removed by DpnI (New England Biolabs) digestion (37 °C, 1 h), and PCR products were purified by magnetic beads (Vazyme Biotech Co., Ltd) and eluted in nuclease-free water. .. Gibson Assembly reactions (50 °C, 15 min) used ClonExpress Ultra One Step Cloning Kit (Vazyme Biotech Co., Ltd).

    Amplification:

    Article Title: Targeting Nipah virus replication: A fluorescence polarization assay for high-throughput modulators screening against the N TAIL –XD interaction
    Article Snippet: .. The amplification product was digested with DpnI (New England Biolabs) to remove the methylated DNA template and then transferred into the pDONR vector (Invitrogen) through a Gateway BP clonase–mediated recombination reaction (Invitrogen). .. From the resulting entry vector, the sequence of interest was then transferred into the pETG20A vector ( ) using Gateway LR clonase (Invitrogen).

    Plasmid Preparation:

    Article Title: Targeting Nipah virus replication: A fluorescence polarization assay for high-throughput modulators screening against the N TAIL –XD interaction
    Article Snippet: .. The amplification product was digested with DpnI (New England Biolabs) to remove the methylated DNA template and then transferred into the pDONR vector (Invitrogen) through a Gateway BP clonase–mediated recombination reaction (Invitrogen). .. From the resulting entry vector, the sequence of interest was then transferred into the pETG20A vector ( ) using Gateway LR clonase (Invitrogen).



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